All modules for which code is available
- plugins.absorption_corrections.base_absorption_correction
- plugins.absorption_corrections.mc_near_absorption_correction
- plugins.alignment.projection_2d_alignment
- plugins.alignment.projection_shift
- plugins.alignment.projection_vertical_alignment
- plugins.alignment.sinogram_alignment
- plugins.alignment.sinogram_clean
- plugins.azimuthal_integrators.base_azimuthal_integrator
- plugins.azimuthal_integrators.pyfai_azimuthal_integrator
- plugins.azimuthal_integrators.pyfai_azimuthal_integrator_separate
- plugins.azimuthal_integrators.pyfai_azimuthal_integrator_with_bragg_filter
- plugins.basic_operations.arithmetic_operations
- plugins.basic_operations.basic_operations
- plugins.basic_operations.data_threshold
- plugins.basic_operations.elementwise_arrays_arithmetics
- plugins.basic_operations.get_data_statistics
- plugins.basic_operations.no_process_plugin
- plugins.basic_operations.rescale_intensity
- plugins.basic_operations.value_substitution
- plugins.centering.centering360
- plugins.centering.vo_centering
- plugins.component_analysis.base_component_analysis
- plugins.component_analysis.ica
- plugins.component_analysis.pca
- plugins.corrections.base_correction
- plugins.corrections.camera_rot_correction
- plugins.corrections.convert_360_180_sinogram
- plugins.corrections.dark_flat_field_correction
- plugins.corrections.distortion_correction
- plugins.corrections.monitor_correction
- plugins.corrections.mtf_deconvolution
- plugins.corrections.phase_unwrapping
- plugins.corrections.subpixel_shift
- plugins.corrections.time_based_correction
- plugins.corrections.time_based_plus_drift_correction
- plugins.docstring_parser
- plugins.driver.all_cpus_plugin
- plugins.driver.base_driver
- plugins.driver.basic_driver
- plugins.driver.cpu_iterative_plugin
- plugins.driver.cpu_plugin
- plugins.driver.gpu_plugin
- plugins.driver.iterative_plugin
- plugins.driver.multi_threaded_plugin
- plugins.driver.plugin_driver
- plugins.filters.band_pass
- plugins.filters.base_filter
- plugins.filters.denoising.base_median_filter
- plugins.filters.denoising.ccpi_denoising_cpu
- plugins.filters.denoising.ccpi_denoising_cpu_3D
- plugins.filters.denoising.ccpi_denoising_gpu
- plugins.filters.denoising.ccpi_denoising_gpu_3D
- plugins.filters.denoising.denoise_bregman_filter
- plugins.filters.denoising.iterative.iterative_ccpi_denoising
- plugins.filters.denoising.median_filter
- plugins.filters.denoising.median_filter_gpu
- plugins.filters.denoising.wavelet_denoising_gpu
- plugins.filters.dezingers.base_dezinger_sinogram
- plugins.filters.dezingers.dezinger
- plugins.filters.dezingers.dezinger_gpu
- plugins.filters.dezingers.dezinger_sinogram
- plugins.filters.dezingers.dezinger_sinogram_gpu
- plugins.filters.find_peaks
- plugins.filters.fresnel_filter
- plugins.filters.hilbert_filter
- plugins.filters.image_interpolation
- plugins.filters.inpainting.inpainting
- plugins.filters.list_to_projections
- plugins.filters.paganin_filter
- plugins.filters.poly_background_estimator
- plugins.filters.pymca
- plugins.filters.quantisation_filter
- plugins.filters.spectrum_crop
- plugins.filters.strip_background
- plugins.filters.threshold_filter
- plugins.fitters.base_fitter
- plugins.fitters.simple_fit
- plugins.kinematics.stage_motion
- plugins.loaders.base_loader
- plugins.loaders.base_tomophantom_loader
- plugins.loaders.full_field_loaders.dxchange_loader
- plugins.loaders.full_field_loaders.image_loader
- plugins.loaders.full_field_loaders.lfov_loader
- plugins.loaders.full_field_loaders.mrc_loader
- plugins.loaders.full_field_loaders.multi_nxtomo_loader
- plugins.loaders.full_field_loaders.nxtomo_loader
- plugins.loaders.full_field_loaders.random_3d_tomo_loader
- plugins.loaders.full_field_loaders.tomo_phantom_loader
- plugins.loaders.hdf5_template_loader
- plugins.loaders.image_template_loader
- plugins.loaders.mapping_loaders.base_multi_modal_loader
- plugins.loaders.mapping_loaders.mm_loader
- plugins.loaders.mapping_loaders.nxfluo_loader
- plugins.loaders.mapping_loaders.nxmonitor_loader
- plugins.loaders.mapping_loaders.nxstxm_loader
- plugins.loaders.mapping_loaders.nxxrd_loader
- plugins.loaders.multi_savu_loader
- plugins.loaders.random_hdf5_loader
- plugins.loaders.savu_nexus_loader
- plugins.loaders.yaml_converter
- plugins.plugin
- plugins.plugin_datasets
- plugins.plugin_datasets_notes
- plugins.reconstructions.astra_recons.astra_recon_cpu
- plugins.reconstructions.astra_recons.astra_recon_gpu
- plugins.reconstructions.astra_recons.base_astra_recon
- plugins.reconstructions.astra_recons.base_astra_vector_recon
- plugins.reconstructions.base_recon
- plugins.reconstructions.ccpi_cgls_recon
- plugins.reconstructions.projectors.forward_projector_gpu
- plugins.reconstructions.scikitimage_filter_back_projection
- plugins.reconstructions.scikitimage_sart
- plugins.reconstructions.simple_recon
- plugins.reconstructions.tomobar.tomobar_recon
- plugins.reconstructions.tomobar.tomobar_recon_3D
- plugins.reconstructions.tomobar.tomobar_recon_cpu
- plugins.reconstructions.tomopy_recon
- plugins.reconstructions.visual_hulls_recon
- plugins.reshape.data_removal
- plugins.reshape.downsample_filter
- plugins.reshape.image_stitching
- plugins.reshape.mipmap
- plugins.reshape.sum_dimension
- plugins.ring_removal.ccpi_ring_artefact_filter
- plugins.ring_removal.raven_filter
- plugins.ring_removal.remove_all_rings
- plugins.ring_removal.remove_large_rings
- plugins.ring_removal.remove_unresponsive_and_fluctuating_rings
- plugins.ring_removal.ring_removal_filtering
- plugins.ring_removal.ring_removal_fitting
- plugins.ring_removal.ring_removal_interpolation
- plugins.ring_removal.ring_removal_normalization
- plugins.ring_removal.ring_removal_regularization
- plugins.ring_removal.ring_removal_sorting
- plugins.ring_removal.ring_removal_waveletfft
- plugins.savers.base_image_saver
- plugins.savers.base_saver
- plugins.savers.hdf5_saver
- plugins.savers.image_saver
- plugins.savers.mrc_saver
- plugins.savers.tiff_saver
- plugins.savers.xrf_saver
- plugins.segmentation.evolving_contours.morph_snakes
- plugins.segmentation.evolving_contours.morph_snakes3D
- plugins.segmentation.evolving_contours.region_grow
- plugins.segmentation.evolving_contours.region_grow3D
- plugins.segmentation.gaussian_mixtures.gmm_segment3D
- plugins.segmentation.geo_distance.geo_distance
- plugins.segmentation.geo_distance.geo_distance3D
- plugins.segmentation.masks_initialise.mask_initialiser
- plugins.segmentation.morphological_operations.morph_proc
- plugins.segmentation.morphological_operations.morph_proc_line
- plugins.segmentation.morphological_operations.morph_proc_line3D
- plugins.segmentation.morphological_operations.morph_remove_objects
- plugins.segmentation.thresholding.thresh_segm
- plugins.simulation.tomo_phantom_artifacts
- plugins.simulation.tomo_phantom_quantification
- plugins.stats.comparison
- plugins.stats.min_and_max_deprecated
- plugins.utils
- plugins.visualisation.ortho_slice
- savu
- savu.core.basic_plugin_runner
- savu.core.checkpointing
- savu.core.iterate_plugin_group_utils
- savu.core.iterative_plugin_runner
- savu.core.plugin_runner
- savu.core.transport_setup
- savu.core.transports.base_transport
- savu.core.transports.basic_transport
- savu.core.transports.dosna_transport
- savu.core.transports.hdf5_transport
- savu.core.utils
- savu.data.chunking
- savu.data.data_structures.data
- savu.data.data_structures.data_add_ons
- savu.data.data_structures.data_create
- savu.data.data_structures.data_notes
- savu.data.data_structures.data_types.base_type
- savu.data.data_structures.data_types.data_plus_darks_and_flats
- savu.data.data_structures.data_types.image_data
- savu.data.data_structures.data_types.map_3dto4d_h5
- savu.data.data_structures.data_types.mrc
- savu.data.data_structures.data_types.replicate
- savu.data.data_structures.data_types.stitch_data
- savu.data.data_structures.plugin_data
- savu.data.data_structures.preview
- savu.data.data_structures.utils
- savu.data.experiment_collection
- savu.data.framework_citations
- savu.data.meta_data
- savu.data.plugin_list
- savu.data.stats.statistics
- savu.data.stats.stats_utils
- savu.data.transport_data.base_transport_data
- savu.data.transport_data.basic_transport_data
- savu.data.transport_data.dosna_transport_data
- savu.data.transport_data.hdf5_transport_data
- savu.data.transport_data.slice_lists
- savu.tomo_recon