Plugin Documentation

Absorption Corrections

• Mc Near Absorption Correction

Alignment

• Projection Shift
• Projection Vertical Alignment
• Sinogram Alignment
• Sinogram Clean
• Projection 2D Alignment

Azimuthal Integrators

• Pyfai Azimuthal Integrator
• Pyfai Azimuthal Integrator Separate
• Pyfai Azimuthal Integrator With Bragg Filter

Basic Operations

• Arithmetic Operations
• Basic Operations
• Get Data Statistics
• No Process Plugin
• Data Threshold
• Rescale Intensity
• Value Substitution
• Elementwise Arrays Arithmetics

Centering

• Vo Centering
• Centering360

Component Analysis

• Ica
• Pca

Corrections

• Camera Rot Correction
• Convert 360 180 Sinogram
• Dark Flat Field Correction
• Distortion Correction
• Monitor Correction
• Mtf Deconvolution
• Subpixel Shift
• Time Based Correction
• Time Based Plus Drift Correction
• Phase Unwrapping

Filters

• Band Pass
• Pymca
• Find Peaks
• Fresnel Filter
• Hilbert Filter
• Image Interpolation
• List To Projections
• Paganin Filter
• Poly Background Estimator
• Quantisation Filter
• Spectrum Crop
• Strip Background
• Threshold Filter

Dezingers

• Dezinger
• Dezinger Gpu
• Dezinger Sinogram
• Dezinger Sinogram Gpu

Inpainting

• Inpainting

Denoising

• Ccpi Denoising Cpu
• Ccpi Denoising Cpu 3D
• Ccpi Denoising Gpu
• Ccpi Denoising Gpu 3D
• Denoise Bregman Filter
• Median Filter
• Median Filter Gpu
• Wavelet Denoising Gpu

Iterative

• Iterative Ccpi Denoising

Fitters

• Simple Fit

Kinematics

• Stage Motion

Loaders

• Multi Savu Loader
• Random Hdf5 Loader
• Savu Nexus Loader
• Yaml Converter

Full Field Loaders

• Dxchange Loader
• Image Loader
• Mrc Loader
• Multi Nxtomo Loader
• Nxtomo Loader
• Random 3D Tomo Loader
• Lfov Loader
• Tomo Phantom Loader

Mapping Loaders

• Mm Loader
• Nxfluo Loader
• Nxmonitor Loader
• Nxstxm Loader
• Nxxrd Loader

Reconstructions

• Scikitimage Sart
• Scikitimage Filter Back Projection
• Simple Recon
• Tomopy Recon
• Visual Hulls Recon
• Ccpi Cgls Recon

Astra Recons

• Astra Recon Cpu
• Astra Recon Gpu

Projectors

• Forward Projector Cpu
• Forward Projector Gpu

Tomobar

• Tomobar Recon
• Tomobar Recon 3D
• Tomobar Recon Cpu

Reshape

• Downsample Filter
• Mipmap
• Data Removal
• Image Stitching
• Sum Dimension

Ring Removal

• Ccpi Ring Artefact Filter
• Raven Filter
• Remove All Rings
• Remove Large Rings
• Remove Unresponsive And Fluctuating Rings
• Ring Removal Filtering
• Ring Removal Fitting
• Ring Removal Normalization
• Ring Removal Regularization
• Ring Removal Sorting
• Ring Removal Waveletfft
• Ring Removal Interpolation

Savers

• Hdf5 Saver
• Image Saver
• Tiff Saver
• Xrf Saver
• Mrc Saver

Morphological Operations

• Morph Proc
• Morph Remove Objects
• Morph Proc Line
• Morph Proc Line3D

Evolving Contours

• Morph Snakes
• Morph Snakes3D
• Region Grow
• Region Grow3D

Gaussian Mixtures

• Gmm Segment3D

Geo Distance

• Geo Distance
• Geo Distance3D

Masks Initialise

• Mask Initialiser

Thresholding

• Thresh Segm

Stats

• Min And Max Deprecated
• Comparison

Visualisation

• Ortho Slice

Simulation

• Tomo Phantom Artifacts
• Tomo Phantom Quantification