Savu
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Introduction
About
Introduction
What is a Process list
What is a Savu plugin
Frequently Asked Questions
How To's
Installation Guide
User Guide
Savu Developer Guide
Plugin Developer Guide
Reference
Savu Commands
Savu Config Commands
Plugin Documentation
Absorption Corrections
Mc Near Absorption Correction
Alignment
Projection Shift
Projection Vertical Alignment
Sinogram Alignment
Sinogram Clean
Projection 2D Alignment
Azimuthal Integrators
Pyfai Azimuthal Integrator
Pyfai Azimuthal Integrator Separate
Pyfai Azimuthal Integrator With Bragg Filter
Basic Operations
Arithmetic Operations
Basic Operations
Get Data Statistics
No Process Plugin
Data Threshold
Rescale Intensity
Value Substitution
Elementwise Arrays Arithmetics
Centering
Vo Centering
Centering360
Component Analysis
Ica
Pca
Corrections
Camera Rot Correction
Convert 360 180 Sinogram
Dark Flat Field Correction
Distortion Correction
Monitor Correction
Mtf Deconvolution
Subpixel Shift
Time Based Correction
Time Based Plus Drift Correction
Phase Unwrapping
Filters
Band Pass
Pymca
Find Peaks
Fresnel Filter
Hilbert Filter
Image Interpolation
List To Projections
Paganin Filter
Poly Background Estimator
Quantisation Filter
Spectrum Crop
Strip Background
Threshold Filter
Dezingers
Dezinger
Dezinger Gpu
Dezinger Sinogram
Dezinger Sinogram Gpu
Inpainting
Inpainting
Denoising
Ccpi Denoising Cpu
Ccpi Denoising Cpu 3D
Ccpi Denoising Gpu
Ccpi Denoising Gpu 3D
Denoise Bregman Filter
Median Filter
Median Filter Gpu
Wavelet Denoising Gpu
Iterative
Fitters
Simple Fit
Kinematics
Stage Motion
Loaders
Multi Savu Loader
Random Hdf5 Loader
Savu Nexus Loader
Yaml Converter
Full Field Loaders
Dxchange Loader
Image Loader
Mrc Loader
Multi Nxtomo Loader
Nxtomo Loader
Random 3D Tomo Loader
Lfov Loader
Tomo Phantom Loader
Mapping Loaders
Mm Loader
Nxfluo Loader
Nxmonitor Loader
Nxstxm Loader
Nxxrd Loader
Reconstructions
Scikitimage Sart
Scikitimage Filter Back Projection
Simple Recon
Tomopy Recon
Visual Hulls Recon
Ccpi Cgls Recon
Astra Recons
Astra Recon Cpu
Astra Recon Gpu
Projectors
Forward Projector Cpu
Forward Projector Gpu
Tomobar
Tomobar Recon
Tomobar Recon 3D
Tomobar Recon Cpu
Reshape
Downsample Filter
Mipmap
Data Removal
Image Stitching
Sum Dimension
Ring Removal
Ccpi Ring Artefact Filter
Raven Filter
Remove All Rings
Remove Large Rings
Remove Unresponsive And Fluctuating Rings
Ring Removal Filtering
Ring Removal Fitting
Ring Removal Normalization
Ring Removal Regularization
Ring Removal Sorting
Ring Removal Waveletfft
Ring Removal Interpolation
Savers
Hdf5 Saver
Image Saver
Tiff Saver
Xrf Saver
Mrc Saver
Morphological Operations
Morph Proc
Morph Remove Objects
Morph Proc Line
Morph Proc Line3D
Evolving Contours
Morph Snakes
Morph Snakes3D
Region Grow
Region Grow3D
Gaussian Mixtures
Gmm Segment3D
Geo Distance
Geo Distance
Geo Distance3D
Masks Initialise
Mask Initialiser
Thresholding
Thresh Segm
Stats
Min And Max Deprecated
Comparison
Visualisation
Ortho Slice
Simulation
Tomo Phantom Artifacts
Tomo Phantom Quantification
Framework API
Statistics Documentation
Iterative plugins API
Iterative functionality - developer documentation
Savu pre-run
Tutorials
Training Examples
Savu Confluence Pages
Citations
How to cite Savu software
Savu
Docs
»
What is a Savu plugin
»
Plugin Documentation
Edit on GitHub
Plugin Documentation
¶
Absorption Corrections
¶
Mc Near Absorption Correction
Alignment
¶
Projection Shift
Projection Vertical Alignment
Sinogram Alignment
Sinogram Clean
Projection 2D Alignment
Azimuthal Integrators
¶
Pyfai Azimuthal Integrator
Pyfai Azimuthal Integrator Separate
Pyfai Azimuthal Integrator With Bragg Filter
Basic Operations
¶
Arithmetic Operations
Basic Operations
Get Data Statistics
No Process Plugin
Data Threshold
Rescale Intensity
Value Substitution
Elementwise Arrays Arithmetics
Centering
¶
Vo Centering
Centering360
Component Analysis
¶
Ica
Pca
Corrections
¶
Camera Rot Correction
Convert 360 180 Sinogram
Dark Flat Field Correction
Distortion Correction
Monitor Correction
Mtf Deconvolution
Subpixel Shift
Time Based Correction
Time Based Plus Drift Correction
Phase Unwrapping
Filters
¶
Band Pass
Pymca
Find Peaks
Fresnel Filter
Hilbert Filter
Image Interpolation
List To Projections
Paganin Filter
Poly Background Estimator
Quantisation Filter
Spectrum Crop
Strip Background
Threshold Filter
Dezingers
¶
Dezinger
Dezinger Gpu
Dezinger Sinogram
Dezinger Sinogram Gpu
Inpainting
¶
Inpainting
Denoising
¶
Ccpi Denoising Cpu
Ccpi Denoising Cpu 3D
Ccpi Denoising Gpu
Ccpi Denoising Gpu 3D
Denoise Bregman Filter
Median Filter
Median Filter Gpu
Wavelet Denoising Gpu
Iterative
¶
Iterative Ccpi Denoising
Fitters
¶
Simple Fit
Kinematics
¶
Stage Motion
Loaders
¶
Multi Savu Loader
Random Hdf5 Loader
Savu Nexus Loader
Yaml Converter
Full Field Loaders
¶
Dxchange Loader
Image Loader
Mrc Loader
Multi Nxtomo Loader
Nxtomo Loader
Random 3D Tomo Loader
Lfov Loader
Tomo Phantom Loader
Mapping Loaders
¶
Mm Loader
Nxfluo Loader
Nxmonitor Loader
Nxstxm Loader
Nxxrd Loader
Reconstructions
¶
Scikitimage Sart
Scikitimage Filter Back Projection
Simple Recon
Tomopy Recon
Visual Hulls Recon
Ccpi Cgls Recon
Astra Recons
¶
Astra Recon Cpu
Astra Recon Gpu
Projectors
¶
Forward Projector Cpu
Forward Projector Gpu
Tomobar
¶
Tomobar Recon
Tomobar Recon 3D
Tomobar Recon Cpu
Reshape
¶
Downsample Filter
Mipmap
Data Removal
Image Stitching
Sum Dimension
Ring Removal
¶
Ccpi Ring Artefact Filter
Raven Filter
Remove All Rings
Remove Large Rings
Remove Unresponsive And Fluctuating Rings
Ring Removal Filtering
Ring Removal Fitting
Ring Removal Normalization
Ring Removal Regularization
Ring Removal Sorting
Ring Removal Waveletfft
Ring Removal Interpolation
Savers
¶
Hdf5 Saver
Image Saver
Tiff Saver
Xrf Saver
Mrc Saver
Morphological Operations
¶
Morph Proc
Morph Remove Objects
Morph Proc Line
Morph Proc Line3D
Evolving Contours
¶
Morph Snakes
Morph Snakes3D
Region Grow
Region Grow3D
Gaussian Mixtures
¶
Gmm Segment3D
Geo Distance
¶
Geo Distance
Geo Distance3D
Masks Initialise
¶
Mask Initialiser
Thresholding
¶
Thresh Segm
Stats
¶
Min And Max Deprecated
Comparison
Visualisation
¶
Ortho Slice
Simulation
¶
Tomo Phantom Artifacts
Tomo Phantom Quantification
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